Evolutionary couplings and predicted 3D folds for transmembrane proteins compared to known 3D structures.
Meff is the effective number of sequences in the alignment after weighting by the number of sequences with sequence identity above a similarity threshold.
The fold accuracy is measured by TM score - Template modeling scores (range 0.0 - 1.0). TM score is consided reasonable when > 0.5.
Cα-RMSD - root-mean-square deviation in Å (number of residues).
| Uniprot ID | PFAM | TM Helices | Length | E-Val | Meff | Seq/len | TM Score | Cα-RMSD | PDB | Download link |
|---|---|---|---|---|---|---|---|---|---|---|
| ADIC_SALTY | PF00324 | 12 | 394 | 20 | 24284 | 61.63 | 0.67 | 4.2 (300) | 3ncyA | download_results |
| ADRB2_HUMAN | PF00001 | 7 | 296 | 20 | 35593 | 120.25 | 0.67 | 3.3 (201) | 2rh1A | download_results |
| ADT1_BOVIN | PF00153 | 6 | 285 | 40 | 9828 | 34.48 | 0.48 | 3.8 (136) | 1okcA | download_results |
| AMTB_ECOLI | PF00909 | 10 | 396 | 5 | 4407 | 11.13 | 0.67 | 3.9 (262) | 1xqfA | download_results |
| AQP4_HUMAN | PF00230 | 6 | 215 | 10 | 6469 | 30.09 | 0.50 | 2.9 (100) | 3gd8A | download_results |
| BTUC_ECOLI | PF01032 | 10 | 299 | 10 | 12926 | 43.23 | 0.67 | 3.2 (209) | 1l7vA | download_results |
| C3NQD8_VIBC | PF01554 | 12 | 431 | 20 | 13864 | 32.17 | 0.62 | 4.6 (306) | 3mktA | download_results |
| C6E9S6_ECOBD | PF00361 | 14 | 412 | 10 | 63730 | 154.68 | 0.63 | 4.2 (299) | 3rkoN | download_results |
| COX1_BOVIN | PF00115 | 12 | 486 | 40 | 73822 | 151.90 | 0.66 | 3.7 (421) | 1occA | download_results |
| COX3_BOVIN | PF00510 | 7 | 182 | 3 | 10705 | 58.82 | 0.69 | 2.8 (151) | 1occC | download_results |
| CYB_BOVIN | PF00032/33 | 8 | 378 | 100 | 3727 | 9.86 | 0.66 | 3.9 (268) | 1pp9C | download_results |
| FIEF_ECOLI | PF01545 | 6 | 197 | 5 | 9722 | 49.35 | 0.59 | 2.8 (119) | 3h90A | download_results |
| GLPG_ECOLI | PF01694 | 6 | 169 | 5 | 5263 | 31.14 | 0.64 | 2.6 (126) | 3b45A | download_results |
| GLPT_ECOLI | PF07690 | 12 | 402 | 30 | 24912 | 61.97 | 0.67 | 3.4 (363) | 1pw4A | download_results |
| METI_ECOLI | PF00528 | 6 | 206 | 15 | 30400 | 147.57 | 0.46 | 3.5 (93) | 3dhwA | download_results |
| MIP_BOVIN | PF00230 | 6 | 212 | 10 | 6468 | 22.59 | 0.55 | 3.1 (116) | 1ymgA | download_results |
| MSBA_SALTY | PF00664 | 6 | 310 | 3 | 29034 | 93.66 | 0.57 | 3.3 (180) | 3b60A | download_results |
| O67854_AQUAE | PF00209 | 12 | 463 | 3 | 4500 | 9.72 | 0.55 | 5.1 (274) | 2a65A | download_results |
| OPSD_BOVIN | PF00001 | 7 | 274 | 20 | 35901 | 131.03 | 0.70 | 3.3 (214) | 1hzxA | download_results |
| Q87TN7_VIBPA (TRKH_VIBPA) | PF02386 | 8 | 407 | 10 | 4097 | 10.01 | 0.59 | 4.0 (242) | 3pjzA | download_results |
| Q8EKT7_SHEON | PF00854 | 12 | 447 | 10 | 12063 | 26.98 | 0.40 | 4.6 (180) | 2xutA | download_results |
| Q9K0A9_NEIMB | PF01758 | 10 | 297 | 10 | 4244 | 14.29 | 0.44 | 3.6 (131) | 3zuxA | download_results |
| SGLT_VIBPA (SGLT_VIBPH) | PF00474 | 14 | 487 | 5 | 9563 | 19.64 | 0.49 | 4.6 (214) | 2xq2A | download_results |
| TEHA_HAEIN | PF03595 | 10 | 304 | 3 | 1860 | 6.12 | 0.51 | 4.1 (154) | 3m71A | download_results |
| URAA_ECOLI | PF00860 | 14 | 393 | 3 | 14992 | 38.14 | 0.50 | 4.8 (194) | 3qe7A | download_results |